FastQCFastQC Report
Wed 8 May 2024
EGAF00007961233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478939
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39970.8345530432894377No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35160.7341227170892327No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28590.5969444960631729No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG23420.4889975550122249No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18550.3873144596702294No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17910.37395158882446405No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17200.35912715397994316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15810.33010466886179657No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11770.245751546647903No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11600.24220203407949656No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10420.21756424095761676No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10010.2090036518220483No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9240.1929264478357369No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG9160.19125608898001623No Hit
GCAGAAGCGATGGAAGTGGCGAACAAAACCC8630.18018996156086683No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC7990.1668270907151015No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7730.16139842443400934No Hit
GCAGCCGAAGCGATGGAAGTCGCTTCCCAGG7030.1467827844464535No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6860.1432332718780471No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6690.13968375930964066No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC6420.13404629817158345No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6260.1307055804601421No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5680.11859547875616727No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5150.10752935133701785No Hit
TCTACCCCGGCCAGCACTGGTGGTGTTGGTC4940.10314465934075112No Hit
GAATGCGACAACTATCGCCAGGAATACGATA4860.10147430048503045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)