FastQCFastQC Report
Wed 8 May 2024
EGAF00007961234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461451
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG22830.49474375394137193No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17600.38140560969637083No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16730.3625520369443343No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15070.3265785533025175No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13850.30014020990310997No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13100.2838871299444578No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12780.2769524824954329No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11970.2593991561400885No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10470.22689299622278425No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10110.21909151784263117No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9200.19937111415946657No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9060.19633720590051815No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC9040.1959037904349541No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8980.1946035440382619No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8300.17986741820908395No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8280.1794340027435199No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG8060.17466643262231527No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7680.16643153877659816No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG7430.16101384545704744No Hit
TTTGAAACGCTGCATCTGCACGCCCATACGTTTCTGGTATGCCT6610.14324381136892106No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6220.13479220979042195No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG6170.1337086711265118No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5610.12157303809071818No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5610.12157303809071818No Hit
CAGCAGGCCATCGACGGCCGCGGTCGCTGCATCCTGCAGGGTGC5180.11225460558109096No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4900.10618678906319415No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT4640.10055238801086139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)