FastQCFastQC Report
Wed 8 May 2024
EGAF00007961235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461451
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57721.2508370336178707No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37260.8074530123458397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33270.7209866269658101No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG21890.4743732270598612No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18500.40090930564675337No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16910.3664527761344108No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16570.3590847132198218No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15330.3322129543548502No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10700.23187727407677086No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10520.22797653488669437No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10240.22190871836879755No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9150.1982875754955564No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8940.1937367131071338No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG8920.19330329764156975No Hit
GCAGAAGCGATGGAAGTGGCGAACAAAACCC8010.17358289395840512No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7960.17249935529449498No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC7580.16426446144877788No Hit
GCAGCCGAAGCGATGGAAGTCGCTTCCCAGG6980.15126199748185615No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6790.14714455055899758No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6330.13717599485102427No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC6300.13652587165267818No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.12655731594470485No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5560.12048949942680803No Hit
TCTACCCCGGCCAGCACTGGTGGTGTTGGTC5010.10857057412379646No Hit
GAATGCGACAACTATCGCCAGGAATACGATA4640.10055238801086139No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4620.10011897254529734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)