FastQCFastQC Report
Wed 8 May 2024
EGAF00007961237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464405
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35440.7631270119830751No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28350.610458543727996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8770.18884378936488624No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8530.1836758863491995No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7910.17032547022534208No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5600.12058440369935725No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5350.11520117139135022No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4980.10723398757549983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)