FastQCFastQC Report
Wed 8 May 2024
EGAF00007961239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442336
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57221.293586775663749No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33340.7537256746003039No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8120.1835708601606019No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8020.18131013528177675No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.1684240034724734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4960.11213195398972726No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4860.10987122911090212No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4640.10489763437748681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)