FastQCFastQC Report
Wed 8 May 2024
EGAF00007961241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466607
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36320.7783852363980823No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28480.6103637536513596No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9780.20959822720190655No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8260.17702263360815418No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7890.16909304832546446No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5660.1213012235135778No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5490.11765790054585551No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5190.11122850707340438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)