FastQCFastQC Report
Wed 8 May 2024
EGAF00007961243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450438
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55921.2414583139077964No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34390.7634791025623948No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8540.1895932403571635No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8360.18559712990467056No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8190.18182302558842728No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5190.11522118471354549No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4890.10856100062605731No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4590.10190081653856914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)