FastQCFastQC Report
Wed 8 May 2024
EGAF00007961245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483019
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29390.6084646773729399No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17490.3620975572389492No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15280.3163436634997795No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9460.19585150894685302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8050.16666011067887598No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7490.15506636384904116No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7460.1544452702688714No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7210.1492694904341237No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7110.14719917850022463No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6890.14264449224564665No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6840.1416093362786971No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6740.13953902434479803No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6480.13415621331666042No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6040.12504684080750447No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5100.10558590862885311No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4970.1028945031147843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)