FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458023
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60431.3193660580363868No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16080.35107407269940594No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14590.31854295526643855No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8510.18579852976815575No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7650.16702218010885916No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7560.16505721328404904No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6920.1510841158631772No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6800.14846416009676372No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6410.1399493038559199No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6340.13842099632551202No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6120.13361774408708732No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6080.13274442549828283No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5840.12750451396545587No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5530.12073629490222107No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5040.11003814218936603No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4720.1030515934789301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)