FastQCFastQC Report
Wed 8 May 2024
EGAF00007961249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484565
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28200.5819652678175271No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17420.35949769380784824No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15580.3215254919360664No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9200.18986100935890954No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8380.17293861504648497No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8080.16674749517608575No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7360.15188880748712763No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7310.1508569541753944No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7220.14899961821427465No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7110.1467295409284616No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7040.14528494629203514No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6700.13826834377224934No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6550.13517278383704973No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6380.13166448257715685No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5260.10855096839433306No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4980.10277258984862712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)