FastQCFastQC Report
Wed 8 May 2024
EGAF00007961251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464939
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56421.2134925226750175No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16500.3548852645185713No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14720.31660067234626477No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9030.19421902658198173No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8380.180238697979735No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7590.16324722167854278No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7430.1598059100226051No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6990.15034230296877654No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6830.1469009913128389No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6580.1415239418504363No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6530.14044853195795576No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6390.13743738425901034No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6080.1307698429256311No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5940.12775869522668565No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5050.10861639914053242No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4750.10216393978564929No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4650.10001312000068827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)