FastQCFastQC Report
Wed 8 May 2024
EGAF00007961257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485166
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29350.6049475849503057No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18700.3854350881966172No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9910.20425998524216454No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8490.17499165234167274No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5730.11810390670409715No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4940.10182082009044327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)