FastQCFastQC Report
Wed 8 May 2024
EGAF00007961261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484374
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31340.6470206906233612No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24080.49713651021731137No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13340.27540702019513846No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10080.2081036554398048No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8870.18312295870546313No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7250.14967772836692309No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7240.14947127632779628No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6980.14410352331049975No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6970.14389707127137297No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6610.1364647978628085No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6370.13150994892376552No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5880.12139379900655278No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5540.11437442967624191No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5470.11292926540235437No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5390.11127764908934006No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5260.10859377258069178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)