FastQCFastQC Report
Wed 8 May 2024
EGAF00007961263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461966
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60691.3137330452890472No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22940.49657334089521743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11700.2532653918253724No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9400.2034781780477351No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8790.19027374308931824No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7310.15823675335414294No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7260.1571544226198465No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6900.14936164133291197No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6860.1484957767454748No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5980.12944675582185702No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5780.12511743288467117No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5680.12295277141607824No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5340.11559292242286229No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5160.11169653177939501No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4900.1060684119610534No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA4780.10347081819874189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)