FastQCFastQC Report
Wed 8 May 2024
EGAF00007961265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489520
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29320.5989540774636378No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25320.5172413793103449No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13170.2690390586697173No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10760.21980715803235823No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9080.18548782480797515No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8120.16587677725118483No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7650.1562755352181729No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7240.14789998365746038No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7150.14606144794901127No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6490.13257885275371795No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.12788037260990356No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6010.12277332897532277No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5990.1223647654845563No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5640.11521490439614315No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5110.10438797189083185No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4980.10173230920084982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)