FastQCFastQC Report
Wed 8 May 2024
EGAF00007961267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469151
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58831.2539672727970312No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22530.480229179944197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12350.2632414723617769No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9780.20846166799175533No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8540.18203094526069433No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7250.15453446758080022No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6900.14707418293896848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6650.14174540819480297No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6520.1389744453278369No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6210.13236676464507163No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6140.13087470771670529No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5800.12362757406464016No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5650.12043030921814084No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA4970.10593604191401064No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4780.10188617310844482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)