FastQCFastQC Report
Wed 8 May 2024
EGAF00007961268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487946
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21970.450254741303341No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20300.41602964262438874No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9660.1979727264902264No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8620.1766588925823759No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7840.1606735171514881No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7100.14550790456320986No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6930.14202391248211893No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6100.12501383349796902No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5860.12009525644231123No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5770.11825079004643957No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5750.11784090862513474No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5000.10247035532620413No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4990.10226541461555172No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4900.10042094821968006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)