FastQCFastQC Report
Wed 8 May 2024
EGAF00007961269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487946
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51691.0593385333622984No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29910.6129776655613531No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9810.2010468371500125No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9180.18813557237891076No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8610.1764539518717235No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8060.16518221278584105No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7470.153090710857349No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7030.14407331958864303No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6730.13792509826907076No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6180.1266533591831883No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5960.12214466354883532No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5700.11681620507187271No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5150.10554446598599027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)