FastQCFastQC Report
Wed 8 May 2024
EGAF00007961270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463179
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20580.4443206622061881No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19200.41452656532355747No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8790.18977544318719114No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8370.1807076745707383No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7550.16300393584337805No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6900.14897048441315344No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6490.14011861504947332No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5510.11896048827775008No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5240.11313120845288754No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5180.11183581293625143No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4910.1060065331113889No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4890.10557473460584353No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4660.10060905179207175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)