FastQCFastQC Report
Wed 8 May 2024
EGAF00007961271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463179
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61561.329075800068656No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48761.0527247565196176No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8930.19279803272600873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8790.18977544318719114No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8080.1744465962403304No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7180.15501566349078866No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7160.1545838649852433No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6580.1420617083244275No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5920.1278123576414302No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5870.12673286137756679No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5280.11399480546397829No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5030.10859732414466113No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4930.10643833161693428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)