FastQCFastQC Report
Wed 8 May 2024
EGAF00007961272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491739
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21730.4419010898057709No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19880.40427950599810064No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9280.18871799877577333No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8500.17285592560280963No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8380.1704156066531229No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7310.14865609601841628No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6730.13686122109493043No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5910.12018570827207116No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5570.11327147124795876No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5560.11306811133548489No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5210.10595051439889859No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5190.10554379457395081No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5100.10371355536168576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)