FastQCFastQC Report
Wed 8 May 2024
EGAF00007961273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491739
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52391.0654025814507289No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29050.5907605457366611No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9390.19095495781298616No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9140.1858709600011388No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9000.1830239212265043No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7850.15963753129200653No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7840.15943417137953264No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6770.137674660744826No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6510.13238730302050478No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6150.1250663461714446No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5810.11815210914733222No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5650.11489835054774991No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5440.11062779238579816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)