FastQCFastQC Report
Wed 8 May 2024
EGAF00007961275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471972
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57321.2144788250150433No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50871.077818175654488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8900.188570508419991No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8470.17945979846262067No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8050.1705609654810031No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7520.15933148576610476No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7300.1546701922995432No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6600.13983880399684728No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6380.13517751053028568No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5910.12521929266990417No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5350.1133541820277474No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.11314230505199462No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5140.10890476553693862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)