FastQCFastQC Report
Wed 8 May 2024
EGAF00007961277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468278
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT104032.221543612982032No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29640.6329573458501146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24940.5325896155702382No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC18690.39912188913423224No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15740.3361251222564374No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13410.2863683538410944No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13380.28572770875420156No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11640.2485702937144175No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10990.2346896501650729No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10100.21568384592058565No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9110.1945425580531223No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8730.18642772028581311No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5850.12492579194410158No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5770.12321740504572072No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5670.1210819214227446No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5650.12065482469814938No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5570.11894643779976852No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5520.11787869598828046No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5340.11403482546692349No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5140.10976385822097132No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5120.1093367614963761No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5010.10698772951110239No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG4880.10421160080123346No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4860.10378450407663824No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4770.10186256881595974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)