FastQCFastQC Report
Wed 8 May 2024
EGAF00007961279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444496
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT99452.23736546560599No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58421.3142975414851878No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22750.5118156293869911No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC17290.38897987833411324No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14580.3280119506137288No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13240.2978654476080774No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12340.27761779633562506No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11290.25399553651776396No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10770.24229689356034698No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8890.20000179979122423No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8700.1957272956337065No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8630.19415247831251575No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5610.1262103595982866No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5540.12463554227709586No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5340.12013606421655088No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5210.11721140347719665No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5080.11428674273784242No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5070.11406176883481517No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4980.11203700370756992No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG4900.11023721248335193No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4780.10753752564702496No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4540.10213815197437097No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4510.10146323026528922No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4450.10011338684712573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)