FastQCFastQC Report
Wed 8 May 2024
EGAF00007961283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454175
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT103292.2742335003027465No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57441.2647107392524908No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23160.5099355975119723No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC17590.38729564595145044No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15020.33070952826553646No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14670.3230032476468322No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13070.2877745362470413No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11550.25430726041724006No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11410.25122474816975837No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9410.2071888589200198No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8890.1957395277150878No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8260.18186822260142016No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5650.12440138713051138No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5430.11955743931304014No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5390.11867672152804537No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5250.11559420928056366No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5200.11449331204932019No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5200.11449331204932019No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5050.1111906203555898No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4760.10480541641437773No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG4750.10458523696812902No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4640.1021632630593934No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4590.10106236582814994No Hit

[OK]Adapter Content

Adapter graph