FastQCFastQC Report
Wed 8 May 2024
EGAF00007961284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489908
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG24550.5011144949664019No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22120.45151334536280285No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21070.4300807498550749No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15980.3261836916318982No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15600.31842713325767286No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG15600.31842713325767286No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14840.3029140165092221No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11760.24004506968655337No Hit
AACTTCCAGGCCCGGCAGTACGGTTGCCAGGCGACGTTTACGAC11460.2339214709700597No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11010.2247360728953191No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11010.2247360728953191No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10650.2173877544355267No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10550.2153465548633621No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9890.20187463768707595No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9780.19962931815769494No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8860.18085028209378087No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7640.15594764731337313No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7560.15431468765564146No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7400.15104876834017816No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7380.15064052842574524No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6800.13880157090719072No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6730.13737273120667554No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6430.13124913249018183No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5860.11961429492884379No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC5490.11206185651183487No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5480.11185773655461842No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5380.10981653698245385No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC5220.10655061766699055No Hit
ACGCGCGGAGTAAGAGCCACCGGATTCACGGCCTGCGATCCACG5190.10593825779534116No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5140.10491765800925887No Hit
GTCGTGGAAGCCTTTGCTAGCTTCACGGTTACGCAGATGCGGTG5060.10328469835152723No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG4910.10022289899328037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)