FastQCFastQC Report
Wed 8 May 2024
EGAF00007961286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464427
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG23670.5096602910683488No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20270.43645179974463155No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18990.40889095595217334No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG14770.31802629907391256No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14450.311136088125798No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14370.30941353538876937No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14170.3051071535461978No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11160.2402961068154952No Hit
AACTTCCAGGCCCGGCAGTACGGTTGCCAGGCGACGTTTACGAC10530.22673100401139468No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10370.22328589853733738No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10370.22328589853733738No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10150.21854887851050867No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9600.20670632844343675No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9180.1976629265740364No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8940.19249526836295047No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7760.16708761549177803No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7280.15675229906960622No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7240.1558910227010919No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6850.14749357810807726No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6520.14038804806783411No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6240.1343591134882339No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6140.1322059225669481No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5950.12811485981650506No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5300.11411911882814738No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5290.1139037997360188No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5240.11282720427537589No Hit
ACGCGCGGAGTAAGAGCCACCGGATTCACGGCCTGCGATCCACG4950.10658295060364707No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4820.10378380240597554No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4770.10270720694533263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)