FastQCFastQC Report
Wed 8 May 2024
EGAF00007961289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493052
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53801.0911627982444043No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33870.6869457988204084No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28950.5871591637393216No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG26790.5433503971183566No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16510.3348531189408014No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG15420.312745917266333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14700.29814299505934466No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14670.2975345399673868No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12200.24743840406285747No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA11110.22533120238838905No Hit
TGGGGCGGTCCGGGTGCAGCTCAGGACAACT10960.2222889269285998No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10870.22046356165272626No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10870.22046356165272626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10780.21863819637685275No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10290.20870009654154123No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9630.19531408451846866No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9110.1847675295911993No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9100.18456471122721335No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8700.1764519766677754No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8570.17381533793595808No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8430.1709758808401548No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7690.15596732190519458No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7090.14379822006603765No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6820.13832212423841705No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6400.1298037529510072No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6370.12919529785904935No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5910.11986565311569572No Hit
CAGCGTACCTACTCCGCTCCGGTCCAGCAGC5620.1139839205601032No Hit
GGTCTGCAGGACGATGTTGCACAGTTCGTGC5450.11053600837234206No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5390.10931909818842638No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5350.10850782473248258No Hit
ATGTCTCACGTCGTTGTGAAAAACGATCCGG5210.10566836763667929No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5130.10404582072479171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)