FastQCFastQC Report
Wed 8 May 2024
EGAF00007961290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473377
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG23820.5031930152922512No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20640.43601611400638396No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19580.4136238135777615No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14850.3137034541179652No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14650.30947849177294207No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG14540.30715476248317936No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14230.3006060708483936No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11800.2492727783563629No Hit
AACTTCCAGGCCCGGCAGTACGGTTGCCAGGCGACGTTTACGAC11500.24293533483882826No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10690.22582423734148468No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10420.2201205381757035No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10350.21864180135494543No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9680.20448817749911802No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9630.20343193691286227No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8750.18484210259476064No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8540.18040589213248637No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7990.16878724568367284No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7300.15421112559334316No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7290.153999877476092No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6870.1451274565515435No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6600.13942375738576232No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6540.13815626868225536No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6350.13414255445448342No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG6080.12843885528870225No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5790.12231265988841875No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5630.11893269001240026No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC5550.11724270507439104No Hit
GTCGTGGAAGCCTTTGCTAGCTTCACGGTTACGCAGATGCGGTG5130.10837028414984251No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4940.10435656992207057No Hit
ACGCGCGGAGTAAGAGCCACCGGATTCACGGCCTGCGATCCACG4880.10308908121856365No Hit
ACCCAGAGAACGAATCCAGGTGGTACGGCCCTGAACACGCAGTA4790.10118784816330324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)