FastQCFastQC Report
Wed 8 May 2024
EGAF00007961291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473377
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57491.2144654260768901No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50681.0706054582288536No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31920.6743039902656868No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG24870.5253740676036225No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15220.3215196344562579No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14900.31475969470422094No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG14330.30271855202090514No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13950.2946911235653612No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12050.25455398128764173No Hit
TGGGGCGGTCCGGGTGCAGCTCAGGACAACT11300.23871037249380517No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10590.22371175616897315No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10500.22181052311371274No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9920.20955813231314577No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9810.20723440302338306No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9480.20026321515409493No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9250.19540450845731838No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9200.1943482678710626No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8890.1877995762362768No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8600.1816733808359933No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8020.1694209900354263No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7700.16266105028338937No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6970.14723993772405503No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6850.14470496031704116No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6770.14301497537903193No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6360.13435380257173457No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6240.13181882516472074No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5570.11766520130889334No Hit
ATGTCTCACGTCGTTGTGAAAAACGATCCGG5280.11153900590860984No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.11069401343960522No Hit
CAGCGTACCTACTCCGCTCCGGTCCAGCAGC5220.1102715172051029No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5040.10646905109458212No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4980.1052015623910752No Hit
GGTCTGCAGGACGATGTTGCACAGTTCGTGC4810.10161034439780554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)