FastQCFastQC Report
Wed 8 May 2024
EGAF00007961293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483549
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29920.6187583884983735No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29320.606350132044529No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19660.40657720313763446No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17600.36397552264610206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17300.3577713944191799No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10530.21776490076496902No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10230.2115607725380468No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9820.20308179729458647No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9480.19605045197074134No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9340.19315519213151097No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9070.187571476727281No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9000.18612384680766583No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8480.17537002454766734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7790.1611005296257463No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6940.14352216631613343No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6330.1309071055880583No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6230.12883906284575092No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6170.12759823720036645No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5600.11581039356921428No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5510.11394915510113764No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5480.11332874227844542No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5130.10609059268036952No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5120.10588378840613878No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5030.10402254993806212No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4950.1023681157442162No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4880.10092048582460102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)