FastQCFastQC Report
Wed 8 May 2024
EGAF00007961295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456674
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61391.344284982284956No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28790.6304278325457547No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18850.41276709425104124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16380.3586803715560772No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15870.3475126676797891No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10570.23145613720071648No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9490.20780688193328284No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9050.1981720001576617No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8740.191383787997565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8690.19028891506851714No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8680.1900699404827076No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8010.17539864323346632No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7860.17211402444632276No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7090.1552529813389858No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6330.1386109128174584No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6000.13138475148574258No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5800.12700525976955113No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5690.12459653932564585No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5320.11649447965069175No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5220.11430473379259604No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5000.10948729290478547No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4880.10685959787507063No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4790.10488882660278447No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4750.1040129282595462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)