FastQCFastQC Report
Wed 8 May 2024
EGAF00007961297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486118
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31420.646345126080499No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29840.6138427295430328No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20140.4143027001674491No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18610.3828288604824343No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16880.3472407933876137No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10730.22072830053608386No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10160.20900275241813715No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10060.2069456387132342No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9790.20139143170999635No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9570.1968657815592099No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8890.18287740836587002No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8800.18102600603145738No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG8480.174443242175768No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7670.15778062116605435No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7390.15202070279232613No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6220.1279524724449619No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6150.12651249285152988No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.11416981062211233No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5420.11149556280573854No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5410.11128985143524822No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5340.10984987184181619No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5250.10799846950740354No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5120.10532422169102974No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5070.10429566483857829No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4980.10244426250416566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)