FastQCFastQC Report
Wed 8 May 2024
EGAF00007961299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465735
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55421.1899470729062664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29210.627180692883292No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18840.4045218847627943No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17360.3727441570850376No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15950.34246943004068836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10420.22373238000150303No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9710.20848765929122787No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9320.20011379861938658No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8800.18894865105693154No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8800.18894865105693154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8610.1848690779091114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8210.17628050286106905No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7690.165115355298614No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7360.1580297808839791No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6200.1331229132446563No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5750.12346076631560866No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5570.1195959075439896No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5450.11701933502957691No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5410.11616047752477268No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5340.11465747689136527No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4930.10585418746712186No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4770.10241875744790492No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4690.10070104243829646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)