FastQCFastQC Report
Wed 8 May 2024
EGAF00007961301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506592
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30270.5975222664392648No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10400.20529341166066578No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7970.15732581643610638No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.123768239530036No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5780.11409576148063925No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5200.10264670583033289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)