FastQCFastQC Report
Wed 8 May 2024
EGAF00007961303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478933
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59881.2502792666197569No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9410.19647842182518221No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7330.15304854750038108No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5720.11943215439320322No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5650.1179705720841955No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5000.10439873635769512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)