FastQCFastQC Report
Wed 8 May 2024
EGAF00007961304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510802
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10920.2137814652252732No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6640.12999166017360933No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6020.11785388467547113No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5450.10669496204008598No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5310.10395417402437736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)