FastQCFastQC Report
Wed 8 May 2024
EGAF00007961305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510802
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31350.6137407449461827No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11040.21613071209588058No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8370.163859969224866No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.12157352555393283No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5920.11589617894996494No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5540.10845689719304152No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5220.10219223887142181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)