FastQCFastQC Report
Wed 8 May 2024
EGAF00007961307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487341
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58621.20285385387234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10510.21566008195493505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7950.16313012859578815No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5650.11593524862467963No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5450.1118313460184963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5150.10567549210922127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)