FastQCFastQC Report
Wed 8 May 2024
EGAF00007961309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469319
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29810.6351756481199354No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7390.15746219522329163No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7200.15341377613094717No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5000.10653734453538No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4790.10206277606489401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)