FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446806
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57431.285345317654642No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7790.17434859872069758No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6770.15151989901657542No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5080.1136958769577848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)