FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479187
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16490.34412452758526424No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14240.2971699983513743No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14220.29675262475818415No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13530.2823532357931246No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13260.2767186922850578No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12230.255223952235766No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10920.22788598188181233No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10040.2095215437814465No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9730.20305225308699945No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8580.1790532714785668No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7680.16027145978501087No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6360.13272480263446212No Hit
GCGACGGTGGCTTTTGGTAGACTGAGTACGGTGAACAACGCGTA6270.13084662146510653No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5990.12500339116044468No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5590.11665591929664201No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5440.11352561734771602No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5280.11018662860219496No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4980.10392602470434298No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4950.10329996431455778No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4920.10267390392477257No Hit

[OK]Adapter Content

Adapter graph