FastQCFastQC Report
Wed 8 May 2024
EGAF00007961317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479187
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29390.6133304951928996No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22620.47204953389803983No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16270.33953341806017273No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14730.3073956513845325No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14660.3059348438083671No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14360.2996742399105151No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13130.27400576392932197No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12180.25418051825279064No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10890.22725992149202714No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10290.21473871369632314No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8000.166949437276053No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7970.16632337688626778No Hit
CGCTGCACCGTAAGCGGTGTCGAATATTCTC7210.15046318034504275No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6810.14211570848124008No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6200.12938581388894105No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5940.12395995717746934No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5580.11644723250004696No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5400.11269087016133578No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5360.11185612297495551No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5160.10768238704305416No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4910.10246521712817752No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4900.10225653033158245No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4850.10121309634860713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)