FastQCFastQC Report
Wed 8 May 2024
EGAF00007961318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451403
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14420.3194484750876711No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13190.29220009614468667No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13170.29175703307244305No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13020.28843406003061567No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11830.26207180723211854No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11510.2549827980762201No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9750.215993247718779No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9370.20757504934614968No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8760.19406162564271837No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7760.1719084720305359No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7020.15551513835752087No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6130.1357988316426785No Hit
GCGACGGTGGCTTTTGGTAGACTGAGTACGGTGAACAACGCGTA5610.12427919176434361No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5550.12295000254761268No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5400.11962702950578528No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5190.11497486724722698No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5080.1125380203498869No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4740.10500594812174488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)