FastQCFastQC Report
Wed 8 May 2024
EGAF00007961319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451403
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56991.2625082243582786No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20880.46255784742236983No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14190.3143532497568691No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13750.30460586216750885No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13140.29109243846407756No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13130.2908709069279557No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12330.27314838403820974No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11840.26229333876824035No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10230.2266267614526266No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9270.20535973398493143No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7590.16814243591646488No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7370.16326874212178474No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6770.14997684995447527No Hit
CGCTGCACCGTAAGCGGTGTCGAATATTCTC6360.14089405697348045No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5950.13181126399248566No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5820.12893135402290193No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5420.12007009257802895No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5080.1125380203498869No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4920.10899351577193771No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4830.10699973194684129No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4600.10190450661603932No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4570.10123991200767385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)