FastQCFastQC Report
Wed 8 May 2024
EGAF00007961320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481652
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16190.3361348027206365No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14830.3078986488169882No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14120.2931577155290542No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14080.29232724041424096No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12810.26595965551892237No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12660.2628453738383729No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10450.2169616237449445No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10220.21218639183476867No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9670.20076735900608736No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9360.1943311768662852No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8120.16858644830707648No Hit
GCGACGGTGGCTTTTGGTAGACTGAGTACGGTGAACAACGCGTA6070.12602459867290078No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6040.12540174233679088No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5960.1237407921071645No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5600.11626651607384586No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5240.10879224004052719No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5100.10588557713868103No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5040.10463986446646126No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4960.1029789142368349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)