FastQCFastQC Report
Wed 8 May 2024
EGAF00007961321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481652
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29880.6203649107654489No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24170.5018145881258669No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15940.3309443332530541No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15370.3191100628669662No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14160.2939881906438674No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14010.2908739089633179No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13730.2850605831596256No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12710.2638834677318894No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10630.22069876176160383No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9530.19786069610424123No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8390.17419215533206547No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7580.15737503425709848No Hit
CGCTGCACCGTAAGCGGTGTCGAATATTCTC7260.150731233338593No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6590.13682077516547217No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6390.13266839959140625No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5920.12291031699235133No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5450.1131522343932964No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5140.10671605225349423No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5050.10484748324516456No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5020.10422462690905467No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4990.10360177057294477No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4910.10194082034331842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)