FastQCFastQC Report
Wed 8 May 2024
EGAF00007961323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460803
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55701.2087594915831712No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22020.47786147225604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15410.3344162255888091No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13730.29795812961287144No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13560.29426891752006823No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13560.29426891752006823No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12730.2762568820081467No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11540.25043239735852413No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10650.23111828699031908No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9670.2098510643376888No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7450.16167429465519972No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7320.1588531324665855No Hit
CGCTGCACCGTAAGCGGTGTCGAATATTCTC6790.14735147123608136No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6620.14366225914327815No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5730.12434814877507307No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5650.12261204896669509No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5460.11848881192179739No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5380.11675271211341941No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5150.11176142516433268No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4780.10373196355058453No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC4650.1009108013619703No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4640.10069378888592304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)