FastQCFastQC Report
Wed 8 May 2024
EGAF00007961324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484864
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7930.16355101636747624No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6580.13570815733896516No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5950.12271482312565998No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5940.12250857972544878No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5060.10435916050686378No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4960.10229672650475186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)